PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 18634 Da PI: 9.941 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g XP_009140458.1 26 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 75 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-38 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.91E-27 | 27 | 84 | No hit | No description |
PRINTS | PR00367 | 4.5E-9 | 27 | 38 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 27 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
METGAKVTAV TAATMGIGTR KRDLKPYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSTPE 60 AAARAYDTAV FYLRGPSARL NFPELLAGLT GSGGGGDMSA AYIRRKAAEV GAQVDALGAT 120 VVVKPGESLG GYEDKDNCNG VKSGNGSLER VDLNKLPDPE NSEDDDQWVK RR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-16 | 25 | 83 | 4 | 63 | ATERF1 |
3gcc_A | 7e-16 | 25 | 83 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140458.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140458.1 | 1e-122 | PREDICTED: ethylene-responsive transcription factor ERF008 | ||||
Swissprot | O22174 | 3e-90 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | M4ETP1 | 1e-121 | M4ETP1_BRARP; Uncharacterized protein | ||||
STRING | Bra032173.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 3e-83 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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