PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 124aa MW: 14648 Da PI: 10.8582 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 42.5 | 1.7e-13 | 2 | 80 | 5 | 92 |
HHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 5 klyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 +lyei++d++l+ +isw+ +++nsf+v+d +f +k+Lpk + +nf+ Fv L gF+++ eF h++F +++ XP_009140412.1 2 ELYEIVNDHSLDAIISWTnNSNNSFIVWDVPRFCTKILPKSVEFgRNFSEFVSELRHHGFQRIGW-----------FEFGHNNFVRSRPW 80 69****************7778*****************97764279*************98754...........44556666555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-15 | 2 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.6E-15 | 2 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.53E-17 | 2 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-7 | 3 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MELYEIVNDH SLDAIISWTN NSNNSFIVWD VPRFCTKILP KSVEFGRNFS EFVSELRHHG 60 FQRIGWFEFG HNNFVRSRPW LLKRMVPSKA WDDKFGAKLK AKRDKAKAKK ARAKVVRLLE 120 NLQI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 110 | KAKAKKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140412.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140412.1 | 2e-87 | PREDICTED: heat stress transcription factor A-1d | ||||
TrEMBL | M4ENH1 | 5e-86 | M4ENH1_BRARP; Uncharacterized protein | ||||
STRING | Bra030341.1-P | 8e-87 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 2e-27 | Winged helix-turn-helix transcription repressor DNA-binding |