PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 25812.2 Da PI: 8.1592 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.5e-19 | 65 | 119 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k XP_009140396.1 65 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 119 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.2 | 2.9e-40 | 65 | 154 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l XP_009140396.1 65 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 154 69*************************************************************************************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.491 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 63 | 125 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-18 | 63 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-18 | 65 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-16 | 65 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-16 | 65 | 122 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.0E-24 | 121 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.9E-9 | 121 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MMVVAGADLL CRQTSSHSGV SSFSTGRVVK RERDGCEESQ EEEEKEKTER LISDYHEDEE 60 GVSARKKLRL TKEQSALLEE SFKHHSTLNP KQKQDLARQL NLRPRQVEVW FQNRRARTKL 120 KQTEVDCEFL KKCCETLTDE NIRLQKEIQE LKTLKLTHPP FYMHMPASTL TMCPSCERIG 180 GRSGGESGGK GVGGGSSVAT TVVVDGGTTK GAFSISSKPH FFNPCTNSSA AC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARTKLKQ |
2 | 187 | 194 | GGKGVGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.18857 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140396.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140395.1 | 1e-172 | PREDICTED: homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46603 | 1e-112 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | M4EN30 | 1e-170 | M4EN30_BRARP; Uncharacterized protein | ||||
STRING | Bra030200.1-P | 1e-171 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 1e-104 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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