PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 151aa MW: 17805.9 Da PI: 5.4221 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.8 | 5.6e-09 | 10 | 52 | 8 | 50 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + + +NRe+A rs ++K eLe+kv++Le++ + L el+ XP_009140265.1 10 KIALSNRESAARSKAKKALHESELEDKVETLETQIDILTAELK 52 55789********************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.9E-8 | 3 | 52 | No hit | No description |
SMART | SM00338 | 9.6E-7 | 3 | 67 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.56E-8 | 7 | 55 | No hit | No description |
Pfam | PF07716 | 8.5E-7 | 14 | 52 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MAESDPKHLK IALSNRESAA RSKAKKALHE SELEDKVETL ETQIDILTAE LKLEKRGRMT 60 ADDECVQFRI RLHAGEAHAR LREDLIQQLN GEVRRLIEEA SVQREEMSRL REEVSEYRRR 120 ESERMNANML DQLNINQQFQ EKPQQTNYNF E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140265.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140265.1 | 1e-105 | PREDICTED: transcription factor RF2b-like | ||||
Refseq | XP_022574360.1 | 1e-105 | transcription factor RF2b-like | ||||
TrEMBL | M4ENE0 | 1e-104 | M4ENE0_BRARP; Uncharacterized protein | ||||
STRING | Bra030310.1-P | 1e-105 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM30676 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 9e-15 | bZIP family protein |