PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140261.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 472aa    MW: 50821.6 Da    PI: 9.3237
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.5e-12335393563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR++A rs +RK ++++eLe kv++L++e ++L  +l +l+  +  l++++
  XP_009140261.1 335 KRVKRILANRVSAARSKERKTQYMAELEHKVQTLQSEATTLSAQLTHLQRDSMGLTNQN 393
                     899*********************************************99887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-20331395IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955333396IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.5E-13335389No hitNo description
PfamPF001705.2E-10335392IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-12335391No hitNo description
CDDcd147037.85E-23336385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010628Biological Processpositive regulation of gene expression
GO:0010629Biological Processnegative regulation of gene expression
GO:0090567Biological Processreproductive shoot system development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGGGGGGTDT STMQRATYSS SSIPKQPLPI TPNHHLNPPL LRSPQPFSAD GAGNRVGAPP  60
PIPSYSQIPA TLQLKHSRST SQPSSFFSFD SLPPLNPSPV SVDERNAAGF SPSLPPSPFT  120
MCHSSSRILG GGGDGENLPP RKSHRRSNSD VTFGFSSVMS PPLIPSRSLE RSVSGGEVAS  180
DWSNLVKEEP GEGGGRKKSE SEAMDDVFRA YMNLDNIDVL NSFGGNETVD SSGTRKSSSD  240
SEGESSAKVS SGVKRRAGGD IAPTGRHCRS VSMDSGFMGK LDFGGDEKLP VKASPTNSGE  300
GNSSVEFGNS EFTAAEMKKI SADEKLAEIV MADPKRVKRI LANRVSAARS KERKTQYMAE  360
LEHKVQTLQS EATTLSAQLT HLQRDSMGLT NQNNELKFRL QAMEQQAQLR DALSEKLTEE  420
VQRLKMVIGE TSSRSTSSRR ESNISKTTLS PEMFQQLSIS QQQMQHSKAQ IK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347355ARSKERKTQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00037PBMTransfer from AT2G21230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4012981e-136AF401298.1 Arabidopsis thaliana transcription factor bZIP30 (BZIP30) mRNA, complete cds.
GenBankAY0544971e-136AY054497.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230; F7O24.5) mRNA, complete cds.
GenBankAY0932681e-136AY093268.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140260.10.0PREDICTED: transcription factor RF2a-like
RefseqXP_009140261.10.0PREDICTED: transcription factor RF2a-like
RefseqXP_018514129.10.0PREDICTED: transcription factor RF2a-like
TrEMBLM4ENE40.0M4ENE4_BRARP; Uncharacterized protein
STRINGBra030314.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.11e-162bZIP family protein