PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140191.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 743aa    MW: 84413 Da    PI: 5.4592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-15436480146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd++l +av ++G ++W ++a+++  gRt+ qc +rw+k
   XP_009140191.1 436 RREWTPEEDDQLRNAVGLFGEKDWQSVANEIE-GRTGTQCSNRWNK 480
                      678*****************************.************8 PP
2Myb_DNA-binding40.66e-13498540346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +W+ eEd++l  a + +G ++ ++Ia+ ++ gRt  qc+ rw +
   XP_009140191.1 498 KWSSEEDKRLRVALTFFGAKNYNKIAQFVP-GRTQSQCRARWKD 540
                      8*****************************.***********75 PP
3Myb_DNA-binding34.35.6e-11549592246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eE  +  +avk++G  +W+++a+++   Rt kqc  rw +
   XP_009140191.1 549 GSWTEEEVTKYNEAVKEHGDSNWSKVASHVY-SRTSKQCSRRWET 592
                      78****************************9.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071740288379IPR001005SANT/Myb domain
PROSITE profilePS500904.646289377IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-5291307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-5353389IPR009057Homeodomain-like
SuperFamilySSF466891.23E-10361427IPR009057Homeodomain-like
PROSITE profilePS500907.724378430IPR017877Myb-like domain
SMARTSM007178.8E-4382432IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-11390443IPR009057Homeodomain-like
SuperFamilySSF466893.66E-19415482IPR009057Homeodomain-like
PROSITE profilePS5129421.846431486IPR017930Myb domain
SMARTSM007174.6E-14435484IPR001005SANT/Myb domain
PfamPF002492.3E-14436480IPR001005SANT/Myb domain
CDDcd001673.62E-12438482No hitNo description
Gene3DG3DSA:1.10.10.605.3E-17444488IPR009057Homeodomain-like
PROSITE profilePS5129417.399491546IPR017930Myb domain
SMARTSM007171.2E-10495544IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-18498549IPR009057Homeodomain-like
PfamPF002492.1E-11498540IPR001005SANT/Myb domain
CDDcd001672.46E-9498539No hitNo description
SuperFamilySSF466894.23E-20522595IPR009057Homeodomain-like
SMARTSM007171.1E-9547596IPR001005SANT/Myb domain
PROSITE profilePS5129412.795549598IPR017930Myb domain
PfamPF002492.3E-10549593IPR001005SANT/Myb domain
CDDcd001676.08E-10550593No hitNo description
Gene3DG3DSA:1.10.10.602.5E-14550598IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MDRESMCDSD DDDDIGEDLE ELRRACIVSD SNSGRGLPSD SENEDDFDML RRIKTQLASS  60
PDHPMGLSSL PSDSDNEDDF EMLRSLKRQL ALPMDQEDED DETLVAICKR FSSYENSGVE  120
GTLMNESSRK QVHASCNEPS SEILSRSNTC ESFSEDVEAV STSTEPPLAL ASASSSTFQA  180
FVDAIRKNRS YQKFLRTKLG EIEATIEKNE KLQKDVKIID GFAVSCKRRM KQQAFSQGKD  240
PRFELISTRK LKTHDSSEGN DKETLGPLEN PCVASYRMAL EEYPVSVCRR NWSAKENEDL  300
AKGLKQQLQE ALIHEATERS SDLEGCSDDI DTILESVSNL EITPEMIRQF LLKVNWDQLD  360
IKNRSAAECE ARWMSSEDPL INQGPWTAAE DDYIRLVTQN KSVTDWLDVA VSLGTNRTPF  420
QCLARYQRSL NTDILRREWT PEEDDQLRNA VGLFGEKDWQ SVANEIEGRT GTQCSNRWNK  480
SLVPSRKRVG KSNSKEAKWS SEEDKRLRVA LTFFGAKNYN KIAQFVPGRT QSQCRARWKD  540
SLDPRLNFGS WTEEEVTKYN EAVKEHGDSN WSKVASHVYS RTSKQCSRRW ETLNPHLKLL  600
KKEALRLRRE ATIGNFVDRE SERPLLVASD FLALAERSFE PEPALKKKRK ARQKKADAEC  660
ESEAVCDDTE RQPKRRRKGL ERCSGDGKEK KQRRKRKAVA GTSSSDNSTV TTNCSQVNVG  720
IEKLKPRRKV SAVVPIENQD ALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-213615986155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-213615986155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1675696RRKGLERCSGDGKEKKQRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140191.10.0PREDICTED: myb-like protein L
TrEMBLM4DAA50.0M4DAA5_BRARP; Uncharacterized protein
STRINGBra013415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1