PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 140aa MW: 16274 Da PI: 10.6766 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 50.2 | 7.1e-16 | 10 | 95 | 2 | 91 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F +ly+i++d++ +++isw+ +n+nsf+v+d +++ +++Lpk +n++ F+ +L gFk v + ++ eF+h+ F++g XP_009140186.1 10 FYIQLYQIIDDRSSDQIISWNkSNNNSFIVWDLKKLRSNILPKssSVLGKNMTEFIAKLRSHGFKTVVKGPGE-------LEFSHDDFERGPL 95 899******************8999****************994456689*******************9999.......*********9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.9E-18 | 4 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-13 | 6 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.44E-14 | 7 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-13 | 10 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-5 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-5 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MVRKLSTSSF YIQLYQIIDD RSSDQIISWN KSNNNSFIVW DLKKLRSNIL PKSSSVLGKN 60 MTEFIAKLRS HGFKTVVKGP GELEFSHDDF ERGPLMKKMM VKALSERIER FDAQIKSMKC 120 RLKAKEASLK VENLFQNLRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140186.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140186.1 | 6e-99 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A3P6CAK3 | 1e-97 | A0A3P6CAK3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E9Z9 | 1e-97 | M4E9Z9_BRARP; Uncharacterized protein | ||||
STRING | Bra025606.1-P | 2e-98 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 9e-19 | Winged helix-turn-helix transcription repressor DNA-binding |