PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140132.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 404aa    MW: 44434.5 Da    PI: 5.6366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3628.5e-111433992374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAe v++++l++a+ lL+++se++sp g++ +R++ayf++AL+ar+ +  + l++a++  ++s+ +s++ +aal++f+ +sP++kfsh+
  XP_009140132.1  43 LSLLLQCAEYVATDHLREASILLSEISETCSPFGSSPERVVAYFAQALQARVIS--TYLSSACSQLSESPLQSQKIFAALQTFNSLSPLIKFSHF 135
                     689**************************************************9..555555555555555599999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI +a++ge+ vHiiD+d++qGlQWp L++ LasRp++  s+RiTg+g+    s++ l +tg+rLa+fA++l +pfef+++v k  +  ++
  XP_009140132.1 136 TANQAIFQALDGEDSVHIIDLDVMQGLQWPGLFHILASRPRKIRSIRITGFGP----SSDILASTGRRLADFAASLSLPFEFRPIVGKIGNVTDP 226
                     *****************************************************....9**************************988888888** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseeri 283
                     ++L  +pgEa++V+++   hrl+d ++s  +     L+++++l+P +v++veqe++++++    Fl rf+eal+yysalfd+l  +l++es er 
  XP_009140132.1 227 SRLGRRPGEAVVVHWMQ--HRLYDVTGSDLD----ALEIIRRLRPSLVTMVEQELSYDDGgggCFLGRFVEALHYYSALFDALGDGLGEESGERF 315
                     ****************9..****99999999....*******************9885443449******************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+ +l+ ei+n+v  +g+        +++W+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+
  XP_009140132.1 316 TVEQIVLATEIRNIVGGKGRG-------MMRWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 399
                     *****************9997.......999***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.14416379IPR005202Transcription factor GRAS
PfamPF035142.9E-10843399IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAAKRVHGDY PSSTVKRHKD LDFPEDTTTA LQDDDGAAAI NLLSLLLQCA EYVATDHLRE  60
ASILLSEISE TCSPFGSSPE RVVAYFAQAL QARVISTYLS SACSQLSESP LQSQKIFAAL  120
QTFNSLSPLI KFSHFTANQA IFQALDGEDS VHIIDLDVMQ GLQWPGLFHI LASRPRKIRS  180
IRITGFGPSS DILASTGRRL ADFAASLSLP FEFRPIVGKI GNVTDPSRLG RRPGEAVVVH  240
WMQHRLYDVT GSDLDALEII RRLRPSLVTM VEQELSYDDG GGGCFLGRFV EALHYYSALF  300
DALGDGLGEE SGERFTVEQI VLATEIRNIV GGKGRGMMRW KEELSRVGFR PVSLRGNPAT  360
QAGLLLGMLP WNGYTLVEEN GTLRLGWKDL SLLTASAWQF QPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-139113982377Protein SCARECROW
5b3h_D1e-139113982377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140132.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140132.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A397ZNW70.0A0A397ZNW7_BRACM; Uncharacterized protein
STRINGBo4g143710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]