PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140111.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 126aa    MW: 14039.2 Da    PI: 8.3966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-2212105498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++++lk + l+lp   ++   ++k++ ++ +l +++g+sW+v l+++ ++g+y++t+GW++F+ +n+ ++gD++vF ++g+ ++++++ v+ 
  XP_009140111.1  12 AEVTASNLKADKLSLPVAATTCTALNKQC-QETILVNKEGNSWTVSLRFSESGGMYYITRGWRKFCLDNKCEVGDIFVFNVVGDGKTTPLMCVCP 105
                     5678999999********98555888766.589999************************************************99999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-19499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-19898IPR015300DNA-binding pseudobarrel domain
CDDcd100176.16E-16989No hitNo description
PROSITE profilePS5086313.3249107IPR003340B3 DNA binding domain
SMARTSM010192.8E-1710107IPR003340B3 DNA binding domain
PfamPF023628.1E-2212105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MSSSSFDYCF MAEVTASNLK ADKLSLPVAA TTCTALNKQC QETILVNKEG NSWTVSLRFS  60
ESGGMYYITR GWRKFCLDNK CEVGDIFVFN VVGDGKTTPL MCVCPEKKEC SELLSKHLSR  120
KSGRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-106AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140111.15e-90PREDICTED: B3 domain-containing protein REM12-like
TrEMBLM4E9L81e-87M4E9L8_BRARP; Uncharacterized protein
STRINGBra022287.1-P5e-87(Brassica rapa)
STRINGBra025474.1-P2e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.26e-24B3 family protein