PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30390.3 Da PI: 8.3695 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 54 | 99 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W + Ed l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l XP_009140005.1 54 GAWDQSEDTNLRKLVELYGTKNWKKIANMLG-TRIGKQCRERWHNHL 99 89*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 105 | 147 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eEd +lv+a+k +G+ W++Ia ++ gRt++ +k+rw+ XP_009140005.1 105 KSAWTEEEDRILVEAHKVFGNQ-WAKIALKLC-GRTENAIKNRWN 147 579*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.277 | 48 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-15 | 52 | 101 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.0E-28 | 52 | 146 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-17 | 53 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 54 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.83E-15 | 55 | 99 | No hit | No description |
PROSITE profile | PS51294 | 20.627 | 104 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 105 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-12 | 107 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 107 | 152 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSVMPNQNYN HSGRTFVCTQ NLPTFNSLIT DIPPTYPFID IELPASTKGN FNTGAWDQSE 60 DTNLRKLVEL YGTKNWKKIA NMLGTRIGKQ CRERWHNHLR HGIKKSAWTE EEDRILVEAH 120 KVFGNQWAKI ALKLCGRTEN AIKNRWNGTK RRMHQKRMKR SDKNANPPQN VILARYIRHV 180 TNKNESPNTK ETDCTKDDKH ENAFDGEMDL SLDVTTQTRE PLASMSTTSC SVPEPATTFS 240 WDDYFTYICE SMDDIQMLMQ GLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-36 | 54 | 152 | 8 | 106 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 159 | KRRMHQKRMKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013745691.2 | 0.0 | transcription factor MYB115-like | ||||
TrEMBL | A0A3P6CVU6 | 0.0 | A0A3P6CVU6_BRACM; Uncharacterized protein | ||||
STRING | Bra025575.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13303 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40360.1 | 1e-55 | myb domain protein 115 |