PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 263aa    MW: 30390.3 Da    PI: 8.3695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-175499248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W + Ed  l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l
   XP_009140005.1 54 GAWDQSEDTNLRKLVELYGTKNWKKIANMLG-TRIGKQCRERWHNHL 99
                     89*****************************.*************97 PP

2Myb_DNA-binding52.11.5e-16105147145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eEd +lv+a+k +G+  W++Ia ++  gRt++ +k+rw+
   XP_009140005.1 105 KSAWTEEEDRILVEAHKVFGNQ-WAKIALKLC-GRTENAIKNRWN 147
                      579*****************99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.27748103IPR017930Myb domain
SMARTSM007175.6E-1552101IPR001005SANT/Myb domain
SuperFamilySSF466893.0E-2852146IPR009057Homeodomain-like
PfamPF002493.1E-175399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2354106IPR009057Homeodomain-like
CDDcd001678.83E-155599No hitNo description
PROSITE profilePS5129420.627104154IPR017930Myb domain
SMARTSM007172.2E-16104152IPR001005SANT/Myb domain
PfamPF002491.2E-14105147IPR001005SANT/Myb domain
CDDcd001671.04E-12107147No hitNo description
Gene3DG3DSA:1.10.10.603.0E-19107152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSVMPNQNYN HSGRTFVCTQ NLPTFNSLIT DIPPTYPFID IELPASTKGN FNTGAWDQSE  60
DTNLRKLVEL YGTKNWKKIA NMLGTRIGKQ CRERWHNHLR HGIKKSAWTE EEDRILVEAH  120
KVFGNQWAKI ALKLCGRTEN AIKNRWNGTK RRMHQKRMKR SDKNANPPQN VILARYIRHV  180
TNKNESPNTK ETDCTKDDKH ENAFDGEMDL SLDVTTQTRE PLASMSTTSC SVPEPATTFS  240
WDDYFTYICE SMDDIQMLMQ GLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-36541528106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149159KRRMHQKRMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.20.0transcription factor MYB115-like
TrEMBLA0A3P6CVU60.0A0A3P6CVU6_BRACM; Uncharacterized protein
STRINGBra025575.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.11e-55myb domain protein 115