PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139966.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 349aa    MW: 40117.1 Da    PI: 6.6385
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.2e-191764350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ++ +s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  XP_009139966.1 17 SSTHSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGELKTWP 64
                    7788999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.0542567IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-142799IPR002100Transcription factor, MADS-box
PfamPF003191.8E-102963IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRSPRPSSCS KCSSSPSSTH SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL  60
KTWPEDRDKV KDLALRYIQL DEAKRRKKSV NLYEFLNKMK EKKTMINKKA KRNVEELKYP  120
ISDHYSPHQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSLNPSHFT QESMLKNQEL  180
CVNDKNSNNF QHLCVSDYSA VQESALRYHS MLYDQNMMCM GNINNVQHPW LSNAHPPELQ  240
EPNQLMQREL NYGFDQNMCM SDTTNSFSVV DPCLPNMLPD DFCFDFQDPY GGNMVGNPSF  300
SQDFFPDMSS SYVYGSRLLQ ESTLPSLSSS NITNENSEIP SNLPDDHRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139966.10.0PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL02e-56AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLM4EA000.0M4EA00_BRARP; Uncharacterized protein
STRINGBra025607.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.18e-58AGAMOUS-like 78
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]