PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009139965.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 290aa MW: 32987.1 Da PI: 7.9916

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.8	1.8e-20	18	66	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s++ +++ R+ +++KKA+EL +LCd+e++vi ++++g+l++++ XP_009139965.1 18 SSSSYSRAATSLNSRLLTVFKKAQELTTLCDIEACVIHYGPDGELKTWP 66 799*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0062	16	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.11	27	69	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-10	27	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.85E-14	28	101	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRSPRPSSCS KCSSASSSSS SYSRAATSLN SRLLTVFKKA QELTTLCDIE ACVIHYGPDG 60 ELKTWPEDRD KVKDLALRYI QLDKAKRRKK SVNLHEFLNK MEDKKTMLHK FKKRAKKNVE 120 ELKYPISVHY SPDQINQLIQ SLELSYSKLQ ERHRFLAAKK QNESLNPNQF KQLPQESVLK 180 NHEVCVNDQN NNFQHLCVSA VQESGGSDYQ LMMPYSGGYD QSMCTVNNFQ DPCVSNIQDY 240 SVFPPELQES DPYGANMVGN PSFSQDFYPD MSSSSVDENR LLQASTLPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139965.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022574536.1	0.0	agamous-like MADS-box protein AGL75 isoform X2
Swissprot	Q9FLL0	2e-59	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	M4EA02	0.0	M4EA02_BRARP; Uncharacterized protein
STRING	Bra025609.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-59	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]