PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139964.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 336aa    MW: 38320 Da    PI: 6.3072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-201866250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++++s++ +++  R+ +++KKA+EL +LCd+e++vi ++++g+l++++
  XP_009139964.1 18 SSSSYSRAATSLNSRLLTVFKKAQELTTLCDIEACVIHYGPDGELKTWP 66
                    799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00621668IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.112769IPR002100Transcription factor, MADS-box
PfamPF003193.4E-102765IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-1328101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRSPRPSSCS KCSSASSSSS SYSRAATSLN SRLLTVFKKA QELTTLCDIE ACVIHYGPDG  60
ELKTWPEDRD KVKDLALRYI QLDKAKRRKK SVNLHEFLNK MEDKKTMLHK FKKRAKKNVE  120
ELKYPISVHY SPDQINQLIQ SLELSYSKLQ ERHRFLAAKK QNESLNPNQF KQLPQESVLK  180
NHEVCVNDQN NNFQHLCVSA VQESGGSDYQ LMMPYSGGYD QSMCTVNNFQ DPCVSNIQDY  240
SVFPPELQES VSNYAFNQLM QHELFGFDQN MCMGDTTNSF NVVDPCLSDD FCFEFQDPYG  300
ANMVGNPSFS QDFYPDMSSS SVDENRLLQA STLPSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139964.10.0PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL02e-69AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLM4EA020.0M4EA02_BRARP; Uncharacterized protein
STRINGBra025609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.17e-70AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]