PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009139952.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 367aa MW: 42316.1 Da PI: 8.0462

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.4	1.1e-19	15	63	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +++KKA+EL +LCd+e++vi ++++g+l++++ XP_009139952.1 15 SSSSYSLAATSLNSRLLTVFKKAQELTTLCDIEACVIHYGPDGELKTWP 63 799*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.11	24	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-12	27	98	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.6E-10	29	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MRPPRPSPSS KCSSSSSSYS LAATSLNSRL LTVFKKAQEL TTLCDIEACV IHYGPDGELK 60 TWPEDRDKVR SLALRYIQLD QDKRRKKSIN LYEFLNKMKD KKKMINSFKK KAKRNVEELK 120 YPISHHYSPY QINQLIQSLE LSYSTLQERR RFLAAKANLE DRQHSFNPSQ FTQESVLKNQ 180 ELCVNVKNNN SFQHLCVSDY STVQESALRY HSMLYGGTYD QNMMCMGNIN NVQHPWLSNA 240 HPPELQEPNQ LMQHELNYGF DQNMLCMGDT TNSFSVVDPC LPNMLPDDFC FDFQDPYGGN 300 MVGNPSFSQV FFSRHVFKLC LWEPTTSGVY STISLAPTLL TKTLRFQAIY LMITESEAVY 360 ASACFYF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MRPPRPSPSS KCSSSSSSYS LAATSLNSRL LTVFKKAQEL TTLCDIEACV IHYGPDGELK  60
TWPEDRDKVR SLALRYIQLD QDKRRKKSIN LYEFLNKMKD KKKMINSFKK KAKRNVEELK  120
YPISHHYSPY QINQLIQSLE LSYSTLQERR RFLAAKANLE DRQHSFNPSQ FTQESVLKNQ  180
ELCVNVKNNN SFQHLCVSDY STVQESALRY HSMLYGGTYD QNMMCMGNIN NVQHPWLSNA  240
HPPELQEPNQ LMQHELNYGF DQNMLCMGDT TNSFSVVDPC LPNMLPDDFC FDFQDPYGGN  300
MVGNPSFSQV FFSRHVFKLC LWEPTTSGVY STISLAPTLL TKTLRFQAIY LMITESEAVY  360
ASACFYF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139952.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139952.1	0.0	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-52	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	M4EA12	0.0	M4EA12_BRARP; Uncharacterized protein
STRING	Bra025619.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	4e-55	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]