PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 317aa MW: 34366 Da PI: 8.7086 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.8 | 5.2e-33 | 49 | 103 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 ++YkeClkNhAa+lG+ha+DGCgEfmps++ +++++lkCaACgCHRnFHRre+ XP_009139922.1 49 FTYKECLKNHAAALGSHALDGCGEFMPSPSLVsTDPTSLKCAACGCHRNFHRREP 103 68**************************9988899******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 49 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-27 | 50 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.3E-31 | 50 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.258 | 51 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.33E-18 | 171 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-29 | 173 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.8E-25 | 182 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDMATHTTIT SPPKSPEPEP ETPNRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA 60 ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR REPGNDSSIR PPPSSVAATI 120 EYQPHHRHHP PPPPQLPPPR SPNSSSPPPI SSSYMLLSLS GTNNNNNLAF SGNNHHHQTG 180 SRKRFRTKFS QFQKEKMHEF ADRVGWKMQK RDEDDVREFC RQIGVDKSVL KVWMHNNKNN 240 FNRRDIQFSV AAAGATEIHK TDNGGGGIHA PIPAGETNNN GCNELHHSVS NGGGGFDSDS 300 GGGGGAHGGD VNGSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-19 | 181 | 240 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139922.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139922.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9LHF0 | 5e-95 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | M4EA37 | 0.0 | M4EA37_BRARP; Uncharacterized protein | ||||
STRING | Bra025644.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 2e-68 | homeobox protein 30 |
Publications ? help Back to Top | |||
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