PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139913.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 323aa    MW: 37397.9 Da    PI: 10.1638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-1680125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v  +G++ W+ Iar+m+ gRt+k+c++rw++ 
   XP_009139913.1  80 RGHWKPSEDFKLKELVGVFGPKKWNHIARKMQ-GRTGKSCRLRWFNQ 125
                      899*****************************.***********996 PP
2Myb_DNA-binding51.91.8e-16132174145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + ++++eE+e+l+ +++ +G++ W++Ia+ ++ gRt++ +k++w+
   XP_009139913.1 132 KSAFSEEEEEKLLAVHRTFGNK-WSLIAKLFP-GRTDNAVKNHWH 174
                      5789******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.12275126IPR017930Myb domain
SMARTSM007174.8E-1379128IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-2880173IPR009057Homeodomain-like
PfamPF002491.7E-1480125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2481133IPR009057Homeodomain-like
CDDcd001671.97E-1183124No hitNo description
PROSITE profilePS5129425.71127181IPR017930Myb domain
SMARTSM007172.7E-14131179IPR001005SANT/Myb domain
PfamPF002491.4E-14132174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-21134181IPR009057Homeodomain-like
CDDcd001675.25E-11134174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYVFMCLSMY IMVYVHGFKE NNLKKTRMEF PKYPCDVSHC RVPFNGLGDN NASSLRELCN  60
KRKMMHQENK KKQLSKVCTR GHWKPSEDFK LKELVGVFGP KKWNHIARKM QGRTGKSCRL  120
RWFNQLDPRI IKSAFSEEEE EKLLAVHRTF GNKWSLIAKL FPGRTDNAVK NHWHILMARK  180
LRKQSISYSK SRKRQTPSPD EITPLHLLPS FNLFPGSVGD ESTEFNNYSW KMPKEESANL  240
RDQFLLEEYC SMRMSMQYLG HHHHHQHGFS TFPADSVELL TRYLSNSQPS SSPPTSALST  300
SGAENTMTTT PPRFIDFLGV GAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-31581815128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139913.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A3P6CD840.0A0A3P6CD84_BRACM; Uncharacterized protein
STRINGBra025652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-94myb domain protein 110