PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009139911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 445aa MW: 47707.9 Da PI: 5.2466 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.4 | 3.1e-38 | 128 | 187 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+ prC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ XP_009139911.1 128 PDKILPSPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 187 789999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-31 | 124 | 185 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-30 | 130 | 186 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.475 | 132 | 186 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 445 aa Download sequence Send to blast |
MSDPAIKLFG KTIPLPELLG GDLTEHQDQN PVRLSDSCTG DDEEMGDSGL AEGGGGGDDG 60 GCGDSESQQE EKDTECGEES LCNESSNVGG AASSIITEKT ETTKAAKTDE ETSQNGGTCS 120 QEGKLKKPDK ILPSPRCNSM ETKFCYYNNY NVNQPRHFCK KCQRYWTAGG TMRNVPVGAG 180 RRKNKNPASH FNRHVTITSA EAMQKAAAAR TADNGTSLLT FGSDSVLCES MASGLNLADK 240 SMLKKTEANA GLKITVPLNP SKEQAGTISP LPCFPGPPPP PPPTWPYAWN GVSWTAVPFY 300 PPPAYWSYPG VSPGTWNSIA WVPQPTSPSA GSGPNSPTLG KHSRDESVAE PGTVLEETES 360 PLGREKSKPE RCLWVPKTLR IDDPEEAAKS SIWETLGIKK DEKADTFGAF RSPNKEKNSL 420 SQGRRPELQA NPAALSRSAN FHESS |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.27223 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009139911.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352939 | 1e-126 | AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139911.1 | 0.0 | PREDICTED: cyclic dof factor 2 | ||||
Swissprot | Q93ZL5 | 0.0 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | M4EA48 | 0.0 | M4EA48_BRARP; Uncharacterized protein | ||||
STRING | Bra025655.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13795 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 0.0 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|