PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139615.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 320aa    MW: 35379 Da    PI: 5.1523
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731162.2e-3696187297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      fqrlwseeDe++lLqG+idfka+ gksp++d+d+fye ++ksisf++sk q+v+Kir+LK+K+ +k k+   g e s++k+hd ++++l+  iW
  XP_009139615.1  96 SFQRLWSEEDEVSLLQGMIDFKADSGKSPYEDMDRFYELASKSISFEASKIQFVDKIRSLKRKYMGKAKH---GAE-SLTKAHDIDCLKLATCIW 186
                     69****************************************************************9999...655.9***************** PP

          DUF573  97 g 97 
                     g
  XP_009139615.1 187 G 187
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.2E-2897187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTKKKLTPLE DPPTASSTDD DQVEALSGDD EKEQISDDSS PDDLTNPVAI PSAKRSKSEK  60
PIAVTEPKAV KKRPIETTSV SAKRARTAEE AKKPSSFQRL WSEEDEVSLL QGMIDFKADS  120
GKSPYEDMDR FYELASKSIS FEASKIQFVD KIRSLKRKYM GKAKHGAESL TKAHDIDCLK  180
LATCIWGLAL DSNSSAKKLG KEEEEVVAPE SANGDKVEED REVLVSGGEK DKEVLINGGG  240
ASKCHGVRAD DWFEDSFLVG SIAGLGVSEQ FVKQKWSMVT VETKKRMEKK WKLLQAKEME  300
LVLHKTDFMR EIGSVIAEAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284291KRMEKKWK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.61790.0flower| root| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139615.10.0PREDICTED: probable transcription factor At1g61730 isoform X2
TrEMBLA0A3P6CBD10.0A0A3P6CBD1_BRACM; Uncharacterized protein
STRINGBra032717.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-72DNA-binding storekeeper protein-related transcriptional regulator