PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009139571.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 477aa MW: 53001.7 Da PI: 6.315

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.3	3.3e-35	27	117	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d++++e++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++ XP_009139571.1 27 FLVKTYEMVDDSSTDEIVSWSSNNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQKHLLKN 112 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_009139571.1 113 IHRRK 117 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.77E-35	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.0E-37	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.6E-61	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.2E-30	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MNGALGNSSA SVNGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE 60 FSRLLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH 120 SHSQPPVSSV DQERAALQEH MDKLSREKAA IEAKLFKFKQ HKATAKHNFD EMAEHVEDME 180 KRQEKLMSFL ETAMRNPTFI KSFGRKVEEL DLDVSAYNKK RRLPQGEQSK PPSEDSHLDN 240 SSGSSRPESG NIFHQNFSSK LRLVLSPAVS DLNMVSHSIQ SSNEGGASPK GILSGSDPKT 300 TQTRREGLPF APEALELADT GSCPGILLLN DKTIPEPLQQ MITSSEETDG SFSCHLNLTL 360 ASAPLPDKTA SQIAKATHKS QEIGRVTELN FNSIETSSSE KNRGQQEVAA GGKQANAAPP 420 ARVNDVFWEQ FLTERPGSSD NEEASSTYRE NPCEEQEEKR NGHVMSRNTK NIEQLTL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MNGALGNSSA SVNGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE  60
FSRLLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH  120
SHSQPPVSSV DQERAALQEH MDKLSREKAA IEAKLFKFKQ HKATAKHNFD EMAEHVEDME  180
KRQEKLMSFL ETAMRNPTFI KSFGRKVEEL DLDVSAYNKK RRLPQGEQSK PPSEDSHLDN  240
SSGSSRPESG NIFHQNFSSK LRLVLSPAVS DLNMVSHSIQ SSNEGGASPK GILSGSDPKT  300
TQTRREGLPF APEALELADT GSCPGILLLN DKTIPEPLQQ MITSSEETDG SFSCHLNLTL  360
ASAPLPDKTA SQIAKATHKS QEIGRVTELN FNSIETSSSE KNRGQQEVAA GGKQANAAPP  420
ARVNDVFWEQ FLTERPGSSD NEEASSTYRE NPCEEQEEKR NGHVMSRNTK NIEQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-24	3	116	1	129	Heat shock factor protein 1
5d5v_B	5e-24	3	116	1	129	Heat shock factor protein 1
5d5v_D	5e-24	3	116	1	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139571.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139571.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_009139572.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	M4EVB9	0.0	M4EVB9_BRARP; Uncharacterized protein
STRING	Bra032752.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]