PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139386.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 174aa    MW: 19864.6 Da    PI: 9.8527
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003290112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+++F +   L  Hir+H
  XP_009139386.1  90 HKCSICSQMFGTGQALGGHIRRH 112
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.1E-644112No hitNo description
PfamPF139128.8E-114469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9724572IPR007087Zinc finger, C2H2
SMARTSM003550.434567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139126.5E-989114IPR007087Zinc finger, C2H2
PROSITE profilePS501578.87190117IPR007087Zinc finger, C2H2
SMARTSM003550.190112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKRDRSDYED FITHIDMIKT LTMSSHSFVV KQIESTGSKI NGNRFECKTC NRKFDSFQAL  60
GGHRASHKKP KLMSVEQEQA KHRNNENDVH KCSICSQMFG TGQALGGHIR RHRASMINEQ  120
SVISSKVYTS PVNDQCQSSK RVMRLDLNLT PLENDLLNIF AKNLAPHIDL KFVN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139386.11e-129PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-66ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3P6BYU01e-127A0A3P6BYU0_BRACM; Uncharacterized protein
TrEMBLM4FFD31e-127M4FFD3_BRARP; Uncharacterized protein
STRINGBra039806.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-90C2H2 family protein