PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 31081.6 Da PI: 8.2924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.2e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + +G +W+t++ + g+ R +k+c++rw +yl XP_009139333.1 16 KGFWSPEEDEKLSRFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 73 | 114 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +teE+e+++ + lG++ W+ Ia++++ gRt++++k++w+++l XP_009139333.1 73 STEEEEIILTFHSSLGNK-WSMIAKYLP-GRTDNEIKNYWHSHL 114 8*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.29 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-9 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 17 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-7 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-19 | 19 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.626 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-9 | 73 | 114 | No hit | No description |
Pfam | PF00249 | 1.9E-12 | 73 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MAKTKSGEKL KHRQRKGFWS PEEDEKLSRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI 60 NYLRPGLKRD MISTEEEEII LTFHSSLGNK WSMIAKYLPG RTDNEIKNYW HSHLKKRWLK 120 SPSISSSSES RVSCVERNPQ TVVSNHVISF QGPPENTSSS PSHEINGNNK YPCSSGPEIP 180 RIFFSDWFSS SDLTDSSHNQ APSIERSVLD YQESCDVDQF HYNERMINNS NWTLDDVVFG 240 SKCQKQEHKV DREASDCNSY GFFFSSSTMT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 16 | 117 | 7 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139333.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519609 | 1e-136 | AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139330.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-142 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A3P5ZFW6 | 0.0 | A0A3P5ZFW6_BRACM; Uncharacterized protein | ||||
STRING | Bo1g040300.1 | 1e-145 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-141 | myb domain protein 18 |
Publications ? help Back to Top | |||
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