PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139311.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 284aa    MW: 32567.8 Da    PI: 10.0308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000651134123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    ykC+ C ksF +   L  H+ + H
  XP_009139311.1 11 YKCKFCFKSFVNERALGGHMLSlH 34
                    9******************99888 PP
2zf-C2H215.55.1e-05181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk+F++   L  H  +H
  XP_009139311.1 181 FTCETCGKVFKSYQALGGHRASH 203
                     89***********9999998887 PP
3zf-C2H2120.00066226248123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_009139311.1 226 HECPICLRVFTSGQALGGHKRSH 248
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0231134IPR015880Zinc finger, C2H2-like
PfamPF138948.4E-41134No hitNo description
PROSITE profilePS501579.1821134IPR007087Zinc finger, C2H2
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.02181203IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-11181205IPR007087Zinc finger, C2H2
SuperFamilySSF576678.73E-8181248No hitNo description
PROSITE profilePS5015711.053181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM003550.14226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203226248IPR007087Zinc finger, C2H2
PfamPF139123.8E-12226248IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
TLYSLLKTES YKCKFCFKSF VNERALGGHM LSLHNFCIEE EARPSQLSDD SESDVSSSSY  60
SHEVERKRSG LREEKHPTMY DDQRNITNLT RKRSKRTRKL DSFASKKMKT SQLGYKTEPE  120
PPYSSASDTT TEKDLAVCLM MLSRDKWKKK NKTSSSTKEV VEEIDNNSSK MNRATRTKGR  180
FTCETCGKVF KSYQALGGHR ASHKKNRVSN KIEYDSVVVV EEKRIHECPI CLRVFTSGQA  240
LGGHKRSHGL GNLSVNHHQV RRTESVKQRM LDLNFPAPTE EDKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139311.10.0PREDICTED: zinc finger protein ZAT9-like, partial
SwissprotQ9M2021e-118ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLM4DDB50.0M4DDB5_BRARP; Uncharacterized protein
STRINGBra014483.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-98C2H2-like zinc finger protein