PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139172.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 425aa    MW: 47255.7 Da    PI: 9.7561
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.8e-39147206362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  XP_009139172.1 147 EAALKCPRCDSTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 206
                     6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-35130199IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32149204IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.469150204IPR003851Zinc finger, Dof-type
PROSITE patternPS013610152188IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MMNTERGKKR IYIGKEIYIN KLRKLILFFV SHSAPPFSLP ISLPLPLSLW INSFLCDVIF  60
HHICNLKKHF KLISKMDFSS LPVNQFDSHN WQQQGNTQQQ DRVTSYQNPN FNLPQFSSPP  120
ASQAGSSQAR VNSMVERARI AKIPLPEAAL KCPRCDSTNT KFCYFNNYNL TQPRHFCKTC  180
RRYWTRGGAL RNVPVGGGFR RNKRSKSNGG GRSKSTVVVS ADNNNTSSSL SSNPSYSNPS  240
KFLSYGQAPG FTSNLPILPP FQSHGGYNSS NIGLDFSGIQ MSGMSSSGGM LDPWRMSSLQ  300
QSQQFPFLSN TSGLDQSSNA LYPLLDGNEG VNQADPQQES SDYSNQLRSK PLMDMEQPRN  360
MKAEENDQDL DKDGNGVNNL SRNFLGNINI NPSGNDEYTS WGGNSSINSS WTGFTSNNST  420
GHLSF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139172.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139172.20.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U11e-163DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A397ZJK00.0A0A397ZJK0_BRACM; Uncharacterized protein
TrEMBLM4DE330.0M4DE33_BRARP; Uncharacterized protein
STRINGBra014752.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-124OBF-binding protein 3