PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009139025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 29373.1 Da PI: 7.5537 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 26 | 77 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a++kl+g+ XP_009139025.1 26 CRYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDKAALKLFGH 77 78*****999.**********965...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.73E-30 | 26 | 86 | No hit | No description |
Pfam | PF00847 | 1.5E-13 | 26 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.0E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 27 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA 60 EEAAMAYDKA ALKLFGHDAY LNLPHLQRKQ GPSVNNTQRF KWVPSKKFIS MFPSRGLLNV 120 NAQPSLHIIQ QRLDELKRNG LLSQSYSSSP SSASFLDEQK KPEMDLNEFL QQMGILKDKS 180 QAEASEVAVS HYTPPWKEQE ESGGPFTDQS LSWETMIDEM PGSETSAMHF DCSNFGSYDD 240 LEDDLGFPSI WNFCGSLDE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 28 | 84 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009139025.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189469 | 0.0 | AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139025.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F-like | ||||
Refseq | XP_013675410.1 | 0.0 | dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 1e-137 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A3P6C5Q8 | 0.0 | A0A3P6C5Q8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DDP9 | 0.0 | M4DDP9_BRARP; Uncharacterized protein | ||||
STRING | Bra014617.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8168 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-127 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|