PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 299aa MW: 33459.4 Da PI: 9.3012 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.3 | 1.2e-39 | 59 | 136 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls+ak+y++rhkvC +hsk+++v+vsgl+qrfCqqCsrfh+l efD ekrsCrrrLa hnerrrk+qa XP_009139003.1 59 RCQVEGCKMDLSNAKTYYSRHKVCGIHSKSSKVTVSGLHQRFCQQCSRFHQLCEFDLEKRSCRRRLACHNERRRKPQA 136 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-30 | 54 | 121 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.573 | 57 | 134 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-36 | 58 | 137 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.3E-29 | 60 | 133 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MELLMGSGQN RTETVGSSSR ESSSLSGGLR IGQKIYFEDG SGSGKDRANK YRKTTTGARC 60 QVEGCKMDLS NAKTYYSRHK VCGIHSKSSK VTVSGLHQRF CQQCSRFHQL CEFDLEKRSC 120 RRRLACHNER RRKPQATRAT LFTSGSVLGD PSWDRSVFSQ GSSRFSITYP EMVKNSSTDS 180 SCVLSLLSNS NTTQQQQQQL QTSTNAYLMD AERVTIMAKS PPVSVHNQYS NQTWEFMSGE 240 KSNSPCVSSP ALRLSQISEP DDDLQFLMSN GATMGGFELN LQQQVLRQYS STQHFTWPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 60 | 133 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189469 | 0.0 | AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139003.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 15 isoform X2 | ||||
Swissprot | Q9M2Q6 | 1e-109 | SPL15_ARATH; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | A0A3P6BWF2 | 0.0 | A0A3P6BWF2_BRACM; Uncharacterized protein | ||||
STRING | Bra014599.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 4e-97 | squamosa promoter binding protein-like 15 |
Publications ? help Back to Top | |||
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