PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009138793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27725.3 Da PI: 6.528 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk nrqvtfskR+ g+lKKA+ELSvLCd+eva+iifss+gklye+ss XP_009138793.1 9 KRIENKVNRQVTFSKRKGGLLKKAYELSVLCDVEVALIIFSSSGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 76.1 | 9.7e-26 | 80 | 168 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+ +++++qe++kL++++e+L r++R llGedL+++s+keL+ Le+qLe +l+ R++K + +eq+e+l++ke++l ++nk+++ ++ XP_009138793.1 80 NRPEESTQKWSQEVTKLRSKYESLLRTHRYLLGEDLGEMSVKELETLERQLEGALSATRQRK--VTMEQMEDLRRKERQLGDINKKMKLEV 168 4567889****************************************************998..678******************998776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.212 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.84E-41 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-32 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-23 | 83 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.951 | 86 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MARGRVEVKR IENKVNRQVT FSKRKGGLLK KAYELSVLCD VEVALIIFSS SGKLYEFSSD 60 AMEKTIERYN RCNINILDNN RPEESTQKWS QEVTKLRSKY ESLLRTHRYL LGEDLGEMSV 120 KELETLERQL EGALSATRQR KVTMEQMEDL RRKERQLGDI NKKMKLEVEG HEFKGFQDLL 180 LNSDARAGST DFSLLSSHHN SVDCDVGQFL KIGFQQQYEQ GDGSLVLESN VGCDCETNLT 240 QG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-22 | 1 | 79 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 1e-22 | 1 | 79 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 1e-22 | 1 | 79 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 1e-22 | 1 | 79 | 1 | 87 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00417 | DAP | Transfer from AT3G61120 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009138793.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138791.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL13 | ||||
Swissprot | Q38837 | 1e-113 | AGL13_ARATH; Agamous-like MADS-box protein AGL13 | ||||
TrEMBL | A0A397ZIS4 | 1e-174 | A0A397ZIS4_BRACM; Uncharacterized protein | ||||
STRING | Bra014454.1-P | 1e-164 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61120.1 | 1e-115 | AGAMOUS-like 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|