PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009138752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 555aa MW: 62438.2 Da PI: 6.3892 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.5e-23 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +k+a+e+ +g+ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF + +++ XP_009138752.1 127 FVKILTASDTSTHGGFSVLRKHATEClpaldMGQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RGENG 219 89*****************************666666779************************************************..34888 PP ..EEEEE- CS B3 91 elvvkvfr 98 l+v+v+r XP_009138752.1 220 DLRVGVRR 227 89***998 PP | |||||||
2 | Auxin_resp | 96.8 | 3.2e-32 | 253 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ tk++F v+Y+Pr s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er ++Gt+vg+ dl++ +Wp S WrsL+ XP_009138752.1 253 ASHAVVTKTIFLVFYKPRI--SQFIVGVNKYMEAMKHGFSLGTRFRMRFEGEESPERMFTGTIVGIGDLSS-QWPASTWRSLQ 332 6899**************8..9**********************************************777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-40 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-37 | 121 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-19 | 125 | 227 | No hit | No description |
SMART | SM01019 | 1.1E-20 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-21 | 127 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.069 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-29 | 253 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-7 | 443 | 487 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.05E-11 | 449 | 527 | No hit | No description |
PROSITE profile | PS51745 | 24.228 | 451 | 543 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.2E-6 | 491 | 535 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MANVDGDDLR TSLSRSYNDE LYTELWKACA GPLVEVPLAG EKVFYFPQGH MEQLVASTNQ 60 GIESEEIPDF KLPPKILCRV LSVMLKAEHD TDEVYAQITL KPEEDQSELT SLDPPLVEPT 120 KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMGQ ATPTQELVTR DLHGFEWRFK 180 HIFRGQPRRH LLTTGWSTFV SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQSTMPTSVI 240 SSQSMHLGVL ATASHAVVTK TIFLVFYKPR ISQFIVGVNK YMEAMKHGFS LGTRFRMRFE 300 GEESPERMFT GTIVGIGDLS SQWPASTWRS LQVQWDEPTT FQRPDRVSPW EIEPFLSSPP 360 VSTPAQQSQP KCKRSRPVES SVLTPAPPSF LYGFPQSQET PSPPPPSASS CYRLFGFDLT 420 SNPPAPIPPD KCQEPITPSA ANEPKKQQKQ RTRTKVIMQG VAVGRAVDLT LLKSYNELIK 480 ELEEMFEIKG QLLTREKWVV VFTDDEGDMM LAGDDPWNEF CKMAKKIFIY SSDEVKKMTT 540 MLKSSSSLEN DESMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 18 | 357 | 16 | 357 | Auxin response factor 1 |
4ldw_A | 1e-163 | 18 | 357 | 16 | 357 | Auxin response factor 1 |
4ldw_B | 1e-163 | 18 | 357 | 16 | 357 | Auxin response factor 1 |
4ldx_A | 1e-163 | 18 | 357 | 16 | 357 | Auxin response factor 1 |
4ldx_B | 1e-163 | 18 | 357 | 16 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.30977 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009138752.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979482 | 0.0 | JN979482.1 Brassica rapa subsp. pekinensis auxin response factor 18-2 (ARF18-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138752.1 | 0.0 | PREDICTED: auxin response factor 18 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A397ZQF9 | 0.0 | A0A397ZQF9_BRACM; Auxin response factor | ||||
TrEMBL | H9B4E3 | 0.0 | H9B4E3_BRARP; Auxin response factor | ||||
STRING | Bra014419.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Publications ? help Back to Top | |||
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