PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009138750.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 316aa MW: 35198.6 Da PI: 9.1171

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009138750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9e-39	73	133	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss XP_009138750.1 73 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 133 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	72	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-33	75	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MYDFQEMINV KPMEQIISNT SNNTSQQQQQ QQQQQTFIAT TARPNPNASN GGSGAGNDNN 60 TATAMESTRK ARPQEKVNCP RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV 120 PVGGSSRKNK RSSTPLASPS NPKLPDLNPP FFFATQIPNK SSKDLNLLSF PVMQDHHHGM 180 SQFLHMPKIE NNNTSSSIYA SSSHGASSRG MNTLLPGQMM DSNSVLYSSL GFPTMADYKQ 240 SNNNLSFSID HHQGIGHNTI NNNHRAEDNN HADDMNGASR VLFPFSDTKE FSSTNQEKSH 300 NTYWSGMFSN TGGSSW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009138750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN979481	1e-180	JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138748.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X4
Refseq	XP_009138750.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X5
Swissprot	Q43385	1e-166	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A397ZGR6	0.0	A0A397ZGR6_BRACM; Uncharacterized protein
STRING	Bra014418.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-159	Dof family protein