PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009138749.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 310aa MW: 34384.7 Da PI: 9.5147

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009138749.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.8e-39	67	127	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss XP_009138749.1 67 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 127 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	66	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-33	69	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MINVKPMEQI ISNTSNNTSQ QQQQQQQQQT FIATTARPNP NASNGGSGAG NDNNTATAME 60 STRKARPQEK VNCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS LRNVPVGGSS 120 RKNKRSSTPL ASPSNPKLPD LNPPFFFATQ IPNKSSKDLN LLSFPVMQDH HHGMSQFLHM 180 PKIENNNTSS SIYASSSHGA SSRGMNTLLP GQMMDSNSVL YSSLGFPTMA DYKQSNNNLS 240 FSIDHHQGIG HNTINNNHRA EDNNHADDMN GASRVLFPFS DTKEFSSTNQ EKSHNTYWSG 300 MFSNTGGSSW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009138749.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN979481	1e-180	JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138746.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X1
Refseq	XP_009138747.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X2
Refseq	XP_009138749.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X6
Swissprot	Q43385	1e-163	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	M4DD50	0.0	M4DD50_BRARP; Uncharacterized protein
STRING	Bra014418.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-156	Dof family protein