PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009138748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 316aa MW: 35198.6 Da PI: 9.1171 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.1 | 9e-39 | 73 | 133 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss XP_009138748.1 73 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 133 6899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-30 | 72 | 131 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.2E-33 | 75 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MYDFQEMINV KPMEQIISNT SNNTSQQQQQ QQQQQTFIAT TARPNPNASN GGSGAGNDNN 60 TATAMESTRK ARPQEKVNCP RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV 120 PVGGSSRKNK RSSTPLASPS NPKLPDLNPP FFFATQIPNK SSKDLNLLSF PVMQDHHHGM 180 SQFLHMPKIE NNNTSSSIYA SSSHGASSRG MNTLLPGQMM DSNSVLYSSL GFPTMADYKQ 240 SNNNLSFSID HHQGIGHNTI NNNHRAEDNN HADDMNGASR VLFPFSDTKE FSSTNQEKSH 300 NTYWSGMFSN TGGSSW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009138748.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979481 | 1e-180 | JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138748.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 | ||||
Refseq | XP_009138750.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7-like isoform X5 | ||||
Swissprot | Q43385 | 1e-166 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A397ZGR6 | 0.0 | A0A397ZGR6_BRACM; Uncharacterized protein | ||||
STRING | Bra014418.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-159 | Dof family protein |