PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138747.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 322aa    MW: 35966.5 Da    PI: 8.8939
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.3e-3979139262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  XP_009138747.1  79 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 139
                     6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3078137IPR003851Zinc finger, Dof-type
PfamPF027017.5E-3381137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70583137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDINMYMYDF QEMINVKPME QIISNTSNNT SQQQQQQQQQ QTFIATTARP NPNASNGGSG  60
AGNDNNTATA MESTRKARPQ EKVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG  120
GSLRNVPVGG SSRKNKRSST PLASPSNPKL PDLNPPFFFA TQIPNKSSKD LNLLSFPVMQ  180
DHHHGMSQFL HMPKIENNNT SSSIYASSSH GASSRGMNTL LPGQMMDSNS VLYSSLGFPT  240
MADYKQSNNN LSFSIDHHQG IGHNTINNNH RAEDNNHADD MNGASRVLFP FSDTKEFSST  300
NQEKSHNTYW SGMFSNTGGS SW
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794811e-180JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138747.10.0PREDICTED: dof zinc finger protein DOF3.7-like isoform X2
SwissprotQ433851e-167DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLM4DD500.0M4DD50_BRARP; Uncharacterized protein
STRINGBra014418.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-160Dof family protein