PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138742.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 320aa    MW: 36493 Da    PI: 9.4606
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.11.9e-2941145199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     f+kv tpsdv+k++rlv+pk++ae++      +++++++  l +ed+ g  W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  + +
  XP_009138742.1  41 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnnSSDNNKGLLLNFEDRIGILWSFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRG-ScN 134
                     89****************************99666678899************************************************65.447 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ + r+
  XP_009138742.1 135 KDKLFIDWKRR 145
                     88888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-4131151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-3138148IPR015300DNA-binding pseudobarrel domain
CDDcd100177.77E-2439130No hitNo description
PfamPF023626.0E-2741145IPR003340B3 DNA binding domain
PROSITE profilePS5086313.29641146IPR003340B3 DNA binding domain
SMARTSM010191.2E-2141146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK  60
QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVMTKG WSRFVKDKKL  120
DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGAMFPR FYSYPYPQIQ ASYERHNLYH  180
RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHVATM ASSRGEKRLR LFGVDMECVR  240
GGRGGGGSVN STEEESSTSG GSISRGGVSM AGVGSPLQLR LVSSDGDDQS LVARGAARVD  300
EDHHLFTKKG KSSLSFDLDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-59361483116B3 domain-containing transcription factor NGA1
5os9_B9e-59361483116B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138742.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-158NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A397ZQF00.0A0A397ZQF0_BRACM; Uncharacterized protein
TrEMBLM4DD470.0M4DD47_BRARP; Uncharacterized protein
STRINGBra014415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-148B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]