PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138555.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 260aa    MW: 29152 Da    PI: 5.0414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.21.5e-2188138256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_009138555.1  88 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDQAAYKLRGE 138
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-3487147No hitNo description
Gene3DG3DSA:3.30.730.101.4E-3188146IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2288146IPR016177DNA-binding domain
PROSITE profilePS5103222.73488145IPR001471AP2/ERF domain
SMARTSM003801.1E-3788151IPR001471AP2/ERF domain
PRINTSPR003671.7E-1189100IPR001471AP2/ERF domain
PfamPF008474.0E-1589138IPR001471AP2/ERF domain
PRINTSPR003671.7E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAAIDMFNSS TDLSDPLKEE LMKALKPSLP PVPNTIFGFN QTAPLGLNQL TPYQIHQIQN  60
QLNQRRSTTI SNLSPKPVPM KNMTVHKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT  120
AEEAAMAYDQ AAYKLRGELA RLNLPHTRRE CGYGGGDESF KPLHPSVEAK LEAICQSLVK  180
TEDLDLPCSE TELFLPPKTE YEENTFSDES QVGSSSPESG VTTAFLGFLD SGFDEIGSFV  240
LEKFPSVEID WDAISKLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2187145160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-2187145463ATERF1
3gcc_A5e-2187145463ATERF1
5wx9_A1e-20861461273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411600.0AC241160.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH092L18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138555.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-145ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLM4DMZ20.0M4DMZ2_BRARP; Uncharacterized protein
STRINGBra017879.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-136ERF family protein