PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009138496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25301.1 Da PI: 8.8512 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.5 | 2.4e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+p+f +++q +++ +v+k+FG++ ++ +++a+pe +r+++++sl++eA+ r+ +Pv+Ga+g++ +++++++q+ XP_009138496.1 2 SCNGCRVLRKGCSETCILRPCFqwiesAESQGHATLFVAKFFGRAGLMTFISAVPELNRPALFQSLLFEACGRTVNPVNGAAGLLGSGNWHVCQA 96 6*********************9999777889*************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_009138496.1 97 AVETVLR 103 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.42 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCFQWIESAE SQGHATLFVA KFFGRAGLMT FISAVPELNR 60 PALFQSLLFE ACGRTVNPVN GAAGLLGSGN WHVCQAAVET VLRGGTLRPI SDLLPSPSLI 120 SSNDSTVICT DIGRFSTSRT KLSTSDMKEP PVNRRRSKTE RSESVIDVQL NHRLDLTIPV 180 VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCSENGIIGY NKRERKLLNL FV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17487 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009138496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473874 | 1e-115 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. | |||
GenBank | AY072144 | 1e-115 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. | |||
GenBank | AY122976 | 1e-115 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138496.1 | 1e-169 | PREDICTED: LOB domain-containing protein 39-like | ||||
Refseq | XP_013728972.1 | 1e-169 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 1e-116 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A291LR30 | 1e-167 | A0A291LR30_BRARR; Transcription factor LBD39a | ||||
TrEMBL | A0A3P5ZUC2 | 1e-167 | A0A3P5ZUC2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DMU5 | 1e-167 | M4DMU5_BRARP; Uncharacterized protein | ||||
STRING | Bra017831.1-P | 1e-168 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-96 | LOB domain-containing protein 39 |