PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138487.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 265aa    MW: 28949.4 Da    PI: 6.1508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+++G+++W++I++ ++  R++k+c++rw + 
   XP_009138487.1 13 KGPWSPEEDDLLQKVVEEHGPRNWSLISKSIP-ARSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding53.26.9e-1768109447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++eEde +v+a++++G++ W+tI+r +  gRt++ +k++w++ 
   XP_009138487.1  68 FSAEEDETIVRAHARYGNK-WATISRLLS-GRTDNAVKNHWNST 109
                      89*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.932863IPR017930Myb domain
SuperFamilySSF466895.62E-3010106IPR009057Homeodomain-like
SMARTSM007171.2E-151261IPR001005SANT/Myb domain
PfamPF002497.7E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-251466IPR009057Homeodomain-like
CDDcd001671.16E-151557No hitNo description
SMARTSM007171.6E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129418.92365114IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2167113IPR009057Homeodomain-like
CDDcd001672.29E-1168110No hitNo description
PfamPF002491.2E-1368109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSGPSRKNME RIKGPWSPEE DDLLQKVVEE HGPRNWSLIS KSIPARSGKS CRLRWCNQLS  60
PEVEHRGFSA EEDETIVRAH ARYGNKWATI SRLLSGRTDN AVKNHWNSTL KRKCTPEGYD  120
GNLGEGQPSK RAASGGVCTG LYISPGSPAG SDVSASDGGD PPTYLSLSLP WNNGCDTETV  180
GINGDTVIDG GYTAELFPVR KEEERGIVGG EFMTAVQEMI RTEVRSYMAE LQRGDVGGGL  240
CMPQSVNSCR VGLREFIVNQ IGKME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-38101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138487.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667421e-109KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138487.10.0PREDICTED: transcription factor MYB44-like
RefseqXP_013746531.10.0transcription factor MYB44
SwissprotO231601e-139MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A078GWL30.0A0A078GWL3_BRANA; BnaA03g53870D protein
TrEMBLA0A3P5ZU990.0A0A3P5ZU99_BRACM; Uncharacterized protein
TrEMBLM4DMS80.0M4DMS8_BRARP; Uncharacterized protein
STRINGBra017813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-141myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]