PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138469.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 271aa    MW: 30128.6 Da    PI: 6.3783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35121022101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sw+e+g++fvv+++ efak++LpkyFkh+nf+SF+RQLn+YgF+k+  ++         weF++++F++g+++ll++
  XP_009138469.1  12 FLSKTYQLVDDHSTDGVVSWNEDGTAFVVWETAEFAKDLLPKYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDHFRRGQEDLLSE 97 
                     9***************************************************************9999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_009138469.1  98 IRRRK 102
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.3E-38495IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-349101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTAAQRTVPA PFLSKTYQLV DDHSTDGVVS WNEDGTAFVV WETAEFAKDL LPKYFKHNNF  60
SSFIRQLNTY GFRKTVPDKW EFANDHFRRG QEDLLSEIRR RKAMIAAAAE SNSAGDDDST  120
SSPGSKNPGS VENMVADLSG ENKKLKREND SLSSELAAAK RQRDELVAFL TDQLKVGPEQ  180
IDQMVKGGKF KPNITGDCSS EEESDCEGCG GDGVEKEGVG EGLKLFGVWV KGERKKRGRD  240
EKNFVVGGSH RTDIKNVDFH APLWKRSKVC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26210120129Heat shock factor protein 1
5d5v_B2e-26210120129Heat shock factor protein 1
5d5v_D2e-26210120129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.22771e-117root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138469.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138469.10.0PREDICTED: heat stress transcription factor B-1-like
SwissprotQ963201e-140HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLM4DMR50.0M4DMR5_BRARP; Uncharacterized protein
STRINGBra017800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-118heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]