PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138447.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25556.4 Da    PI: 4.7268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.47e-2059111557
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_009138447.1  59 RKLSDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 111
                     5899***********************************************95 PP
2HD-ZIP_I/II122.91.6e-3957147292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kr+ls+eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++++++++++rLe+e  +L+e+l 
  XP_009138447.1  57 RKRKLSDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNNLKNSHENVVADKCRLESELLQLKEQLY 147
                     8***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.4E-1955116IPR001356Homeobox domain
CDDcd000862.38E-1557113No hitNo description
PROSITE profilePS5007116.48757112IPR001356Homeobox domain
SuperFamilySSF466892.4E-1858122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-2159119IPR009057Homeodomain-like
PfamPF000463.8E-1759111IPR001356Homeobox domain
PRINTSPR000319.3E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.3E-692108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNHTMDDDQN LAFISQLYPD VYTQILPQEE AVKPPKRRRK EIKRAVATGD GSNCFFRKRK  60
LSDEQVNMLE MSFGDEHKLE SERKDRLAAE LGLDPRQVAV WFQNRRARWK NKRLEEEYNN  120
LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGSSNSPIS SSVSVEANET  180
PFFEDYNVRD DGDDYNLFYP VPENTYIDGL EWANLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440PKRRRKE
23759RRKEIKRAVATGDGSNCFFRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138447.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-108AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138447.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X1
SwissprotO232081e-119ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLM4DMP51e-159M4DMP5_BRARP; Uncharacterized protein
STRINGBra017780.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-103homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]