PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138309.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 528aa    MW: 58879.7 Da    PI: 6.3118
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-083333701954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  XP_009138309.1 333 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 370
                     554459******************************88 PP
2BELL1276.9e-41200271172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqel++k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  XP_009138309.1 200 ERQELHNKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 271
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-71135269IPR006563POX domain
PfamPF075263.3E-49141268IPR006563POX domain
PROSITE profilePS5007111.791311374IPR001356Homeobox domain
CDDcd000861.34E-11314375No hitNo description
SMARTSM003898.4E-9314378IPR001356Homeobox domain
SuperFamilySSF466892.01E-16315380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-26317379IPR009057Homeodomain-like
PfamPF059201.0E-17331370IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MENYQEARFL PGNAMIHMNP TVSYSEEVAG KERTEANNVS ASQETQAYSR FGGVSQMQDI  60
QGFGSWRDQA CDRSGFQPMS AIAGPTGVHQ TGQGLSLSLG SQILPGIHQG MSPRPEHFRG  120
NEYATQSISV GNPNMDVVRT IPNSKYLKAA QELLDEAVNV KKSLKQFQPE GDKNKENPQE  180
TDKNPQDSNM NPPAEISQSE RQELHNKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA  240
GYGAAKPYTA LALQTISRHF RSLRDAISGQ IVVTRKCLGE QDGSDGKGVG TISRLKYVDQ  300
HLRQQRGFMQ PQAWRPQRGL PENSVLVLRA WLFEHFLHPY PKDSDKIMLA RQTGLSRGQV  360
SNWFINARVR LWKPMVEEIY KEEFTEHDSN SSSDSTPKMS EVRPVVADDE DRAQELPQDH  420
GHEYGVETCG MVQGGHQMDG GRFISIEPTY HVAEISRFGG GGGVSLTLGL QNSQGHDNVV  480
AMSSEAYNSF PGVYIYGNVI PGAEMEYVNP GSRQNRINSS VMVHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14320378563Homeobox protein Meis2
3k2a_B1e-14320378563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138307.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_009138308.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_009138309.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A3P6AG530.0A0A3P6AG53_BRACM; Uncharacterized protein
STRINGBra017666.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]