PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009138285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 20560.9 Da PI: 4.4927 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.2 | 4.1e-20 | 10 | 96 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ ++++s+ + +p +++ h+++ +kt +l+ + g W+v++ ++k+++++++kGW +Fv +n L++gDf++F ++g + fe + XP_009138285.1 10 FFKVF--ISHHSSDSMLIPISYT--HELPRILPKTAILQGTGGCFWKVEM--KRKRDEVYFGKGWTKFVTDNSLNDGDFLTFVYNGANVFEV--S 96 89999..667777779******8..666677999****************..********************************99888844..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-22 | 4 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-24 | 4 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.775 | 8 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.32E-20 | 8 | 98 | No hit | No description |
Pfam | PF02362 | 5.4E-17 | 10 | 94 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-17 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAEDDTPPRF FKVFISHHSS DSMLIPISYT HELPRILPKT AILQGTGGCF WKVEMKRKRD 60 EVYFGKGWTK FVTDNSLNDG DFLTFVYNGA NVFEVSIYGL GGCKEMRAVT EVEEVKEDSV 120 VSLSSTDSDT SSESVVANTI SKNKGKSQVV EDEDESEEAE AETCSESTVA KTTTGSRNKG 180 LTLFIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-17 | 9 | 103 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009138285.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138285.1 | 1e-136 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
Refseq | XP_009138290.1 | 1e-136 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
Swissprot | Q9SZ05 | 3e-51 | Y3440_ARATH; B3 domain-containing protein At4g34400 | ||||
TrEMBL | M4DMB6 | 1e-134 | M4DMB6_BRARP; Uncharacterized protein | ||||
STRING | Bra017648.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 3e-44 | B3 family protein |
Publications ? help Back to Top | |||
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