PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138155.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 437aa    MW: 49941.2 Da    PI: 6.6958
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.4e-093553931854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  XP_009138155.1 355 MFQNflHPYPTDSEKHLLAIRSGLTRSQVSNWFINARVR 393
                     5887779******************************88 PP

2BELL81.51.1e-26230300172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r++l+ kk  Ll+ll++Vd+r +++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  XP_009138155.1 230 QRRALETKKRNLLNLLQMVDDRCSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERISKKI 300
                     6899*****************************************.***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.1E-33168298IPR006563POX domain
PfamPF075261.8E-25173297IPR006563POX domain
PROSITE profilePS5007111.402334397IPR001356Homeobox domain
SMARTSM003892.6E-6337401IPR001356Homeobox domain
CDDcd000866.06E-11337398No hitNo description
SuperFamilySSF466891.45E-15338406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-26340403IPR009057Homeodomain-like
PfamPF059204.8E-15354393IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MENDNTFSSL DNVMTNQNNL LMDLIPSRED STSFSSMLPW NFMRPDPLQM GGFDIFNSFL  60
TNKYLSSTSS SINVQESFEV MAPPPLLPFH HLDHLRPYDD SSNNMWSFGE NSGFHPYSCV  120
EGVEGPSEPI ASTFAEEDVS DECSEINPYG ATKMTSEQAS SSSKDISNNV SHVIFGSKYL  180
HSVQEILSHF ATYSLNNLEN HPQCYFSSQG TESGAADSAF TAFLEGGFDQ RRALETKKRN  240
LLNLLQMVDD RCSHCVDEIH TVVSAFHAAT ELDPQLHTRF ALQTISFLYK NLRERISKKI  300
LMMGSVLERG KEKSQENSLI HQHCLLQQLK HKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL  360
HPYPTDSEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE EMYAELNKRK LNNTQLQGNG  420
GSRRIPKSIM MTQERNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-14343401563Homeobox protein Meis2
3k2a_B4e-14343401563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138155.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513609.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A3P6A9J60.0A0A3P6A9J6_BRACM; Uncharacterized protein
TrEMBLM4F7H00.0M4F7H0_BRARP; Uncharacterized protein
STRINGBra037031.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]