PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138064.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 365aa    MW: 41262.1 Da    PI: 6.306
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073093422154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009138064.1 309 KWPYPTEEDKARLVEETGLQLKQINNWFINQRKR 342
                     569*****************************87 PP

2ELK26.91.1e-09263284122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++++++++++++E++
  XP_009138064.1 263 ELKHELKQGFKEKIVDIREEIM 284
                     9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-1996140IPR005540KNOX1
PfamPF037901.1E-1699139IPR005540KNOX1
SMARTSM012563.9E-25146202IPR005541KNOX2
PfamPF037912.6E-19153201IPR005541KNOX2
SMARTSM011886.2E-4263284IPR005539ELK domain
PROSITE profilePS512139.446263283IPR005539ELK domain
PfamPF037892.8E-6263284IPR005539ELK domain
PROSITE profilePS5007111.953283346IPR001356Homeobox domain
SuperFamilySSF466891.03E-15285349IPR009057Homeodomain-like
SMARTSM003895.0E-10285350IPR001356Homeobox domain
CDDcd000866.03E-11286345No hitNo description
Gene3DG3DSA:1.10.10.602.1E-24290346IPR009057Homeodomain-like
PfamPF059201.9E-17303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSFNSSHLLP PQEDLPLRHF SSDQSHQPSL LTASFLNLPP TTATTDSKFT HPHRDGDSSA  60
AATNRRWLSF HTEVQNTGEG DPEEVNADGV EDWRSASDKA AILKHPMYEQ LLAAHVACLR  120
VATPVDQIPR IDAQLSQLHT VAAKYSSLGV GMDNKELDHF MSHYVVVLCS FKEQLQHHVC  180
VHALEAITAC WEIEQSLQSI TGVSPSESNG KTMSDDDEDD NQVEESEVNM FDGSLDGSDC  240
MMGFGPLVPT ERERSLVERV KKELKHELKQ GFKEKIVDIR EEIMRKRRAG KLPGDTTSVL  300
KEWWRTHSKW PYPTEEDKAR LVEETGLQLK QINNWFINQR KRNWNSSSST SSTLSKSKRK  360
RIGKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339360RKRNWNSSSSTSSTLSKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.64500.0leaf| root| seed| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138064.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A397L0C30.0A0A397L0C3_BRACM; Uncharacterized protein
STRINGBra023965.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5