PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009138064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 365aa MW: 41262.1 Da PI: 6.306 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 309 | 342 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_009138064.1 309 KWPYPTEEDKARLVEETGLQLKQINNWFINQRKR 342 569*****************************87 PP | |||||||
2 | ELK | 26.9 | 1.1e-09 | 263 | 284 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ XP_009138064.1 263 ELKHELKQGFKEKIVDIREEIM 284 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.3E-19 | 96 | 140 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-16 | 99 | 139 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.9E-25 | 146 | 202 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.6E-19 | 153 | 201 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.2E-4 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.446 | 263 | 283 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.8E-6 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.953 | 283 | 346 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-15 | 285 | 349 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.0E-10 | 285 | 350 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.03E-11 | 286 | 345 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 290 | 346 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.9E-17 | 303 | 342 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSFNSSHLLP PQEDLPLRHF SSDQSHQPSL LTASFLNLPP TTATTDSKFT HPHRDGDSSA 60 AATNRRWLSF HTEVQNTGEG DPEEVNADGV EDWRSASDKA AILKHPMYEQ LLAAHVACLR 120 VATPVDQIPR IDAQLSQLHT VAAKYSSLGV GMDNKELDHF MSHYVVVLCS FKEQLQHHVC 180 VHALEAITAC WEIEQSLQSI TGVSPSESNG KTMSDDDEDD NQVEESEVNM FDGSLDGSDC 240 MMGFGPLVPT ERERSLVERV KKELKHELKQ GFKEKIVDIR EEIMRKRRAG KLPGDTTSVL 300 KEWWRTHSKW PYPTEEDKAR LVEETGLQLK QINNWFINQR KRNWNSSSST SSTLSKSKRK 360 RIGKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 360 | RKRNWNSSSSTSSTLSKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.6450 | 0.0 | leaf| root| seed| silique |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009138064.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352580 | 0.0 | AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138064.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 0.0 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | A0A397L0C3 | 0.0 | A0A397L0C3_BRACM; Uncharacterized protein | ||||
STRING | Bra023965.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32040.1 | 0.0 | KNOTTED1-like homeobox gene 5 |