PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009138058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 770aa MW: 85217.4 Da PI: 7.4778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 2e-18 | 283 | 382 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_009138058.1 283 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 375 99**************************555566778***************9989999999***9.********************654.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_009138058.1 376 LVMGYRK 382 7777665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-30 | 278 | 386 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-20 | 280 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-22 | 281 | 382 | No hit | No description |
SMART | SM01019 | 4.9E-20 | 283 | 383 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.053 | 283 | 384 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 283 | 382 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.8 | 512 | 562 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.5E-13 | 517 | 559 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 770 aa Download sequence Send to blast |
MESTKVCMNA QCGSTSTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR 60 ECNSCDKRLH CGCIASRFMM EVVDNGGVTC ISCAKKSGLF SMNVESNGRE FPTFASAEHV 120 SSVLERTNLK HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG 180 PTLMTSPFHD VDDRSKTTTP IFQLASRSRQ LLPKPANSAP TTAPPMEPNG SLVSQIHVAR 240 PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL 300 PKACAEAYFP PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ 360 AGDTVTFSRT EPEGKLVMGY RKATNSTASQ MFKGSSEPNL NMFSNNLSSG CGDINWSKLD 420 KPEDMSKDGL MLQPSLISAR KRVRNIGTKS KRLLIDSVDV LELRLTWEEA QELLRPPQSA 480 KPSICTVEDH DFEEYDEPPV FGKRTVFVSR QTGEQEQWVQ CDACAKWRRL PVDTLLPPKW 540 LCSDNLLDPG RSSCSAPDEL TPREQDTLLR LSKEFKRRRL ASSNQEEASA LDTLANAAIT 600 TTGEQGETEV AATTKHPRHR AGCSCIVCSQ PPSGKGKHKP SCTCTVCEAV KRRFKTLMMR 660 KRNRGEAGQA SQQAQSDQCR EETEAESIPA VELPAAGGNI DLNSDPASRV SMMSLLQAAT 720 FPLEVYLKQK GVPNTAADQQ SSDIVSTENG SSSAAQEHDR DTSGAPEPMN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-66 | 257 | 390 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 575 | 579 | KRRRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009138058.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138058.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_009138059.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_013719635.1 | 0.0 | B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Refseq | XP_013719637.1 | 0.0 | B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | M4E5B4 | 0.0 | M4E5B4_BRARP; Uncharacterized protein | ||||
STRING | Bra023968.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7203 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|