PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138039.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 195aa    MW: 21679.8 Da    PI: 7.1268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-182877255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  XP_009138039.1 28 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVYYLRG 77
                    7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-262787No hitNo description
SMARTSM003809.4E-382891IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-212886IPR016177DNA-binding domain
PROSITE profilePS5103222.9322885IPR001471AP2/ERF domain
PfamPF008477.3E-122877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-312886IPR001471AP2/ERF domain
PRINTSPR003675.4E-92940IPR001471AP2/ERF domain
PRINTSPR003675.4E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
METAREVAAA VPASTVASAA ATRKREKQYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PEAAARAYDT AVYYLRGPSA RLNFPELLAG VTVEGGNGGG DMSAAYIRRK AAEVGAQVDA  120
LEAAGGNRHH HHHHHQQQRG SHEYVDDDHS LNHSDYRLND GHNECSSKEE FKRCNGSWEA  180
VDLNKLPDPE TSDDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152785463ATERF1
3gcc_A2e-152785463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.174810.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325120.0AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138039.11e-144PREDICTED: ethylene-responsive transcription factor RAP2-10
RefseqXP_013647142.11e-144ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SW631e-91RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLM4D5I71e-143M4D5I7_BRARP; Uncharacterized protein
STRINGBra011744.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.16e-85related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]