PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138031.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 377aa    MW: 43262.6 Da    PI: 8.8183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18281031194
                     HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     + ++ l++p  f+++h  g  k+++kt +l++  s ++Wev+l  ++++    lt+GWk+F+ a++L+ gD+++Fk++g++ f  +v
  XP_009138031.1  28 FHTH-LTIPVAFFSKHieG--KNKQKTAKLRSdASDKTWEVTL--DGRR----LTRGWKDFATAHDLRIGDVIIFKHEGDMVF--NV 103
                     4455.9**********743..457789999987899*******..9998....************************999988..54 PP
2B376.23.6e-24151244498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +++++l+++ l lp + a+++ ++k+++ ++++ +++g+sW+v l++r +sg+y++++GW++F+++n+ k gD +vF l+g+ ++++++ ++ 
  XP_009138031.1 151 EQVTASNLRLDTLDLPVEAASSNALNKRCH-EMIVVNKEGNSWTVSLKFRESSGSYYIRGGWRRFCRDNRRKIGDLMVFNLVGDGKTSPMICICP 244
                     4568999*******************9887.9999*************************************************9999****997 PP
3B351.71.6e-16272369199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefe 91 
                     f+++ ++ ++++s+ l+lp +f++ +g+kk  + +++l+d++g +W  kl    +  + +   l+kGWk+F++an++   g+ ++++l++ +++ 
  XP_009138031.1 272 FVTISLTRYNFRSSKLILPATFMKINGIKK--QNEIILMDKHGVRWVTKLVKdgS--KYGkRGLGKGWKDFCEANDVLkIGEPFLLELVW-EDTL 361
                     7788899****************7777664..459***************77433..3333579***********9644***********.6666 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     +v+k+++k
  XP_009138031.1 362 PVLKFCSK 369
                     99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2414111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2215115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57617109IPR003340B3 DNA binding domain
CDDcd100177.58E-1718106No hitNo description
SMARTSM010199.9E-2520109IPR003340B3 DNA binding domain
PfamPF023621.0E-1230101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-19147240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-20148236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.198148246IPR003340B3 DNA binding domain
CDDcd100171.74E-20148244No hitNo description
SMARTSM010195.5E-25149246IPR003340B3 DNA binding domain
PfamPF023621.4E-22150244IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-20264369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-19266368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-13271368No hitNo description
PROSITE profilePS5086311.279272369IPR003340B3 DNA binding domain
PfamPF023621.8E-15272369IPR003340B3 DNA binding domain
SMARTSM010191.4E-24272370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNCLNSMANP PLESPTNPHF FQPLLPGFHT HLTIPVAFFS KHIEGKNKQK TAKLRSDASD  60
KTWEVTLDGR RLTRGWKDFA TAHDLRIGDV IIFKHEGDMV FNVTPFGPSC CEIQYEQSHL  120
IKEEEIDNND DDNENHCRTK SSFSFDYCFV EQVTASNLRL DTLDLPVEAA SSNALNKRCH  180
EMIVVNKEGN SWTVSLKFRE SSGSYYIRGG WRRFCRDNRR KIGDLMVFNL VGDGKTSPMI  240
CICPEEECSE LVRKTKRRSK WVASSSSRRN RFVTISLTRY NFRSSKLILP ATFMKINGIK  300
KQNEIILMDK HGVRWVTKLV KDGSKYGKRG LGKGWKDFCE ANDVLKIGEP FLLELVWEDT  360
LPVLKFCSKV KVETICD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.198055e-54bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138031.10.0PREDICTED: B3 domain-containing protein REM7
RefseqXP_018512610.10.0PREDICTED: B3 domain-containing protein REM7
RefseqXP_018512611.10.0PREDICTED: B3 domain-containing protein REM7
RefseqXP_018512612.10.0PREDICTED: B3 domain-containing protein REM7
RefseqXP_018512613.10.0PREDICTED: B3 domain-containing protein REM7
TrEMBLM4E5D40.0M4E5D4_BRARP; Uncharacterized protein
STRINGBra023988.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.17e-91B3 family protein