PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138028.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 518aa    MW: 57963.9 Da    PI: 6.3886
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.6e-1322991295
                    HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ++++ ++p +f+++h +g+ +++k ++l++  s r+Wev+l  ++++    +++GWk+F + + ++  D++ F+++g++ f  +v+
  XP_009138028.1 22 QNSNPTIPDSFVSNHlKGNVQSTKLMKLTSdASVRTWEVEL--DGQR----FGRGWKHFSDHHCIRNDDILSFMHVGDMVF--NVT 99
                    455689******999*666677788888885666*******..8888....9*************************9999..665 PP
2B369.16.2e-22184275699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++++l++++++lp kfa+++g+++++  ++ l++e+g+sW++ l++ k+ g+ + ++GW +F+kang+k+  f  Fkl++ +++++v++++ +
  XP_009138028.1 184 ATPSSLSRNQMYLPSKFARANGLNNRQ-CEIDLRNEHGKSWTLDLTHHKSTGQAFVRSGWTSFCKANGIKAESFRRFKLVQ-TGTKPVLQLCPN 275
                     5788999999***********999766.5**************************************************98.888899999975 PP
3B334.24.6e-11303393699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfr 98 
                     +++++lksgr+++p  f +++g+++++  ++t+ +++g +W++ l  + k+++ ++++ G ++   ang+k +gD+++++ ++  +++  +k+++
  XP_009138028.1 303 LKPYMLKSGRVRVPALFGRANGINEAG--KITIVNKDGVEWKLHL-GDMKGRElFYIR-GLRDCFVANGIKkVGDSFTLEAIR-GGTNAILKICS 392
                     6899******************99877..69999***********.455555536665.***********99********997.66667999998 PP

                     S CS
              B3  99 k 99 
                     k
  XP_009138028.1 393 K 393
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-147104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-119104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.75611104IPR003340B3 DNA binding domain
SMARTSM010192.8E-1214104IPR003340B3 DNA binding domain
PfamPF023625.2E-82297IPR003340B3 DNA binding domain
CDDcd100175.19E-727101No hitNo description
Gene3DG3DSA:2.40.330.109.3E-22172275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-20175276IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704179275IPR003340B3 DNA binding domain
SMARTSM010192.8E-27179276IPR003340B3 DNA binding domain
PfamPF023624.5E-21184275IPR003340B3 DNA binding domain
CDDcd100172.24E-19185274No hitNo description
Gene3DG3DSA:2.40.330.103.8E-7294392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-7296393IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-12298394IPR003340B3 DNA binding domain
PROSITE profilePS508638.529298394IPR003340B3 DNA binding domain
PfamPF023621.2E-10302393IPR003340B3 DNA binding domain
CDDcd100172.31E-7303392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MVDPVMASST KKPIFIVDLS GQNSNPTIPD SFVSNHLKGN VQSTKLMKLT SDASVRTWEV  60
ELDGQRFGRG WKHFSDHHCI RNDDILSFMH VGDMVFNVTP FGRSFSQQIN FISSTSKAEN  120
DRSNDDDDEH NIFDDDVYDD DEDVGDDDDD DDDEELYPDK TLSKKRARTE TESSSENTYL  180
VAHATPSSLS RNQMYLPSKF ARANGLNNRQ CEIDLRNEHG KSWTLDLTHH KSTGQAFVRS  240
GWTSFCKANG IKAESFRRFK LVQTGTKPVL QLCPNTEGGD EIESEDCSEP SSMNQNKIVA  300
LELKPYMLKS GRVRVPALFG RANGINEAGK ITIVNKDGVE WKLHLGDMKG RELFYIRGLR  360
DCFVANGIKK VGDSFTLEAI RGGTNAILKI CSKEASFDGY KTPQPRMIQA SQDEEKKETK  420
VQKKSRVSAV GPSHRTRASN RSSVGPSNLQ PKQPPQPCSI SDQVAKVKQC VVDALTDVRQ  480
FRSELEVKER NLEAALLEID VLGEKIMGIS KLFNINQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138028.10.0PREDICTED: putative B3 domain-containing protein REM4
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A397KYI20.0A0A397KYI2_BRACM; Uncharacterized protein
STRINGBo7g115310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]