PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009137844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 36523.2 Da PI: 10.4073 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.7e-31 | 264 | 322 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYeg+Hnh XP_009137844.1 264 SDEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 322 69*************************988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.4E-15 | 229 | 261 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-33 | 251 | 322 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.308 | 258 | 324 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-26 | 261 | 322 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 263 | 323 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 265 | 321 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MAVELMRNSY GGVRVKGEDD GGFSANMEDT ALREAASAGI HGVKEFLKLI NQKSQPTEEI 60 TAVTDVAVNS FKKVISLLGR SRTGHARFRR APVTTKTKEG GDWKTEEKPA TSAVVLNRQK 120 TEQNGGSAFR VYCPTPIHRR PPLSHNNSLI TKNGSSSSAN NGRPQEPSTI NFAPSPPVSA 180 ANSFMSSHRC DTESNQMSSG FEFTNPSSQI SGSIGKPPLS SVSLKRRCDS SPSSRCHCTK 240 KRKSRVKRVI RVPAVSSKMA DIPSDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH 300 VERALDDAMM LIVTYEGDHN HALVLETHHD KTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 251 | 323 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 242 | KRRCDSSPSSRCHCTKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31478 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009137844.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ502842 | 0.0 | FJ502842.1 Brassica rapa subsp. pekinensis WRKY7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137844.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-177 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A398ATE9 | 0.0 | A0A398ATE9_BRACM; Uncharacterized protein | ||||
STRING | Bo1g037740.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 1e-167 | WRKY DNA-binding protein 7 |