PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137844.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 333aa    MW: 36523.2 Da    PI: 10.4073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31264322259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  XP_009137844.1 264 SDEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 322
                     69*************************988****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.4E-15229261IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.7E-33251322IPR003657WRKY domain
PROSITE profilePS5081130.308258324IPR003657WRKY domain
SuperFamilySSF1182906.02E-26261322IPR003657WRKY domain
SMARTSM007742.4E-37263323IPR003657WRKY domain
PfamPF031062.4E-26265321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAVELMRNSY GGVRVKGEDD GGFSANMEDT ALREAASAGI HGVKEFLKLI NQKSQPTEEI  60
TAVTDVAVNS FKKVISLLGR SRTGHARFRR APVTTKTKEG GDWKTEEKPA TSAVVLNRQK  120
TEQNGGSAFR VYCPTPIHRR PPLSHNNSLI TKNGSSSSAN NGRPQEPSTI NFAPSPPVSA  180
ANSFMSSHRC DTESNQMSSG FEFTNPSSQI SGSIGKPPLS SVSLKRRCDS SPSSRCHCTK  240
KRKSRVKRVI RVPAVSSKMA DIPSDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH  300
VERALDDAMM LIVTYEGDHN HALVLETHHD KTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21251323273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224242KRRCDSSPSSRCHCTKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.314780.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137844.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5028420.0FJ502842.1 Brassica rapa subsp. pekinensis WRKY7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137844.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-177WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A398ATE90.0A0A398ATE9_BRACM; Uncharacterized protein
STRINGBo1g037740.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-167WRKY DNA-binding protein 7