PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009137790.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 303aa MW: 33625.8 Da PI: 9.1192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009137790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108	1.1e-33	59	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tks 80 lp+G++F+Ptd+e++ +L+ kv+++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ + XP_009137790.1 59 LPAGVKFDPTDQEVL-GHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKvytdsevGGE 151 799********99.89**9996665442222223554445******.666777899**************75655554337 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009137790.1 152 TRWHKTGKTRPVFT-GGRVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 78********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-38	53	219	IPR003441	NAC domain
PROSITE profile	PS51005	33.334	59	219	IPR003441	NAC domain
Pfam	PF02365	6.3E-15	60	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MTWCNDSSDV QTVETIIPSP TVAESPEASF QVSCHKTCPS CGHKFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLGHLEGKV RDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGVSKDGT 120 VRHFFHRPSK AYTTGTRKRR KVYTDSEVGG ETRWHKTGKT RPVFTGGRVK GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKIFYQT QPRQCSGSLS AAATAKERPY 240 LHGQHLGGGG SRHLYHNNGN VKGNCGGGSA GASEYYNNMP AIISFNQSGI QNHLVHGTQP 300 FIP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009137790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189263	0.0	AC189263.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137790.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	0.0	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	M4E5Z3	0.0	M4E5Z3_BRARP; Uncharacterized protein
STRING	Bra024197.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	0.0	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]