PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137761.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 288aa    MW: 32512.7 Da    PI: 6.309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+d+++ +G+g+W+t ++  g+ R++k+c++rw +yl
   XP_009137761.1 17 KGPWTSEEDQKLIDYIRFHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 64
                     79********************************************97 PP
2Myb_DNA-binding54.33.1e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
   XP_009137761.1  70 RGRFSFEEEETIIQLHSVMGNK-WSAIAARLP-GRTDNEIKNHWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-26867IPR009057Homeodomain-like
PROSITE profilePS5129418.211264IPR017930Myb domain
SuperFamilySSF466893.67E-3114111IPR009057Homeodomain-like
SMARTSM007178.8E-141666IPR001005SANT/Myb domain
PfamPF002496.2E-161764IPR001005SANT/Myb domain
CDDcd001674.10E-121964No hitNo description
PROSITE profilePS5129425.80465119IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2768120IPR009057Homeodomain-like
SMARTSM007172.7E-1669117IPR001005SANT/Myb domain
PfamPF002491.7E-1570114IPR001005SANT/Myb domain
CDDcd001672.57E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEKMGRSPCC DKNGVKKGPW TSEEDQKLID YIRFHGPGNW RTLPKNAGLQ RCGKSCRLRW  60
TNYLRPDIKR GRFSFEEEET IIQLHSVMGN KWSAIAARLP GRTDNEIKNH WNTHIRKRLV  120
RSGIDPVTHS PRLDLLDISS LLAALINQPN FSSVATHASS LLHPDVLRLA SLLLPPQQPL  180
QNFNPIYAPN LDQNIQTPIT TVSSQDSQLQ AECTTPVSNN ETSSFDPFMK ARLEVSHEDV  240
LPPLAESLDL ESLMSTPQQN SIEAEANSSS FFDFGLPDNF TFEDFMLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30171197108B-MYB
1h8a_C5e-301711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137761.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894410.0AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137761.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9M0J51e-149MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A397KYM70.0A0A397KYM7_BRACM; Uncharacterized protein
TrEMBLA0A3P6A8510.0A0A3P6A851_BRACM; Uncharacterized protein
STRINGBo7g111870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-149myb domain protein 41
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]