PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137759.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 268aa    MW: 31195.6 Da    PI: 7.0998
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind29.61.8e-0929113297
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk y i++d++++++isw  ngns++v+ +  ++    +++  hs   S  R    YgF+++ + ++        +e++++ F +g+ + lek
  XP_009137759.1  29 FLKKAYGIVNDPSTDSMISWGPNGNSLIVHRPLPLEY--TESFLFHSGALSMER-FVAYGFTMTVSGSQ--------VEYANDDFVRGQPQRLEK 112
                     9******************************999988..556666888888877.668****9988875........7****************9 PP

                     X CS
    HSF_DNA-bind  97 i 97 
                     i
  XP_009137759.1 113 I 113
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-525116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-926113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-1028113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-829113IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004158.3E-8148230IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-7153228IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-6153229IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-10154228IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MFEFEMEFTR DEAFDRALLR DIKDRVFYFL KKAYGIVNDP STDSMISWGP NGNSLIVHRP  60
LPLEYTESFL FHSGALSMER FVAYGFTMTV SGSQVEYAND DFVRGQPQRL EKICDPFVAR  120
VKQHRELRLK QDNDRKRHWE EIRSYGMVVE IFKHIYSVVD DPATNSFISW GPNGKSFIVL  180
DPQRCACYCF PYNLLEECGF TKTVSGSQME FASENFVAGK PELLKKISEK HKPAMIAYTK  240
KFREWMEAFS RNPAMEKRTD YVLQASSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894411e-134AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137759.10.0PREDICTED: uncharacterized protein LOC103861805
TrEMBLM4E6240.0M4E624_BRARP; Uncharacterized protein
STRINGBra024228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.19e-21HSF family protein