PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009137577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 610aa MW: 69163.4 Da PI: 6.4662 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.7 | 1.2e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_009137577.1 112 FTKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYKWKFKHIFRGQPRRHLLTTGWSTFVTSKKLVAGDTFVFL--RGE 202 89****************************9643..445569************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_009137577.1 203 NGELRVGVRRA 213 999******97 PP | |||||||
2 | Auxin_resp | 112.3 | 4.7e-37 | 238 | 316 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a ha++t+s+F+v+Y+Pr+ s+F+++v+k+++a+++k+svGmRfkm+fe++ds+err+sGtvvgv+d++p +W++SkWrsL XP_009137577.1 238 ACHATQTRSMFTVYYKPRT--SQFIISVNKYLEAMNSKFSVGMRFKMRFEGDDSPERRFSGTVVGVQDCSP-HWKDSKWRSL 316 6899**************6..9*************************************************.********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.97E-39 | 103 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-42 | 106 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.95E-21 | 110 | 212 | No hit | No description |
Pfam | PF02362 | 1.3E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-24 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.816 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.8E-33 | 238 | 316 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.2E-7 | 478 | 534 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.89E-12 | 494 | 574 | No hit | No description |
PROSITE profile | PS51745 | 25.019 | 498 | 598 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.8E-6 | 542 | 586 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MTIGEHMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK 60 ILCRVMNVRL QAEKDTDEVY AQIMLMPEGT VDEPMSPDPS PPELQKPKFH SFTKVLTASD 120 TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG 180 WSTFVTSKKL VAGDTFVFLR GENGELRVGV RRANRQQSSM PSSVISSHSM HLGVLATACH 240 ATQTRSMFTV YYKPRTSQFI ISVNKYLEAM NSKFSVGMRF KMRFEGDDSP ERRFSGTVVG 300 VQDCSPHWKD SKWRSLIVNW DEPASFTRPD KVSPWEMEPF AASENVPQSV NKRARHVNEI 360 SALDVGVPSS NFWSSALTQS HEFAQSCITS QRNPPQNSDW PVSPYSTLNG QMVFPVEQKK 420 PETTTASCRL FGIDLMSSSL PAHEEKTAPM RPINITKPTL DSNADPKSEI SKLSEEKKQE 480 PAQASPKEVQ SKQINSSRSR TKVQMQGVPV GRAVDLTLIN GYVELIDDLE KLFDIEGELK 540 SRNQWEIVFT DDEGDMMLVG DDPWPEFCNM VKRIFIWSKE EVKKMTPGNQ LRILLTEVDT 600 TISKTENYSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
4ldx_A | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
4ldx_B | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.32139 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009137577.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979473 | 0.0 | JN979473.1 Brassica rapa subsp. pekinensis auxin response factor 9-1 (ARF9-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137577.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A078IBW5 | 0.0 | A0A078IBW5_BRANA; Auxin response factor | ||||
STRING | Bra013748.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |